Please use this identifier to cite or link to this item: http://hdl.handle.net/2381/15213
Title: TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea.
Authors: Shao, Y.
Harrison, E. M.
Bi, D.
Tai, C.
He, X.
Ou, H. Y.
Rajakumar, K.
Deng, Z.
First Published: 6-Oct-2010
Publisher: Oxford University Press
Citation: Nucleic Acids Research, 2011, 39 (Database issue), pp. D606-D611
Abstract: TADB (http://bioinfo-mml.sjtu.edu.cn/TADB/) is an integrated database that provides comprehensive information about Type 2 toxin-antitoxin (TA) loci, genetic features that are richly distributed throughout bacterial and archaeal genomes. Two-gene and much less frequently three-gene Type 2 TA loci code for cognate partners that have been hypothesized or demonstrated to play key roles in stress response, bacterial physiology and stabilization of horizontally acquired genetic elements. TADB offers a unique compilation of both predicted and experimentally supported Type 2 TA loci-relevant data and currently contains 10,753 Type 2 TA gene pairs identified within 1240 prokaryotic genomes, and details of over 240 directly relevant scientific publications. A broad range of similarity search, sequence alignment, genome context browser and phylogenetic tools are readily accessible via TADB. We propose that TADB will facilitate efficient, multi-disciplinary and innovative exploration of the bacteria and archaea Type 2 TA space, better defining presently recognized TA-related phenomena and potentially even leading to yet-to-be envisaged frontiers. The TADB database, envisaged as a one-stop shop for Type 2 TA-related research, will be maintained, updated and improved regularly to ensure its ongoing maximum utility to the research community.
DOI Link: 10.1093/nar/gkq908
ISSN: 0305-1048
eISSN: 1362-4962
Links: http://hdl.handle.net/2381/15213
http://nar.oxfordjournals.org/content/39/suppl_1/D606
Version: Publisher Version
Status: Peer-reviewed
Type: Journal Article
Rights: © The Author(s) 2010. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Appears in Collections:Published Articles, Dept. of Infection, Immunity and Inflammation

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