Please use this identifier to cite or link to this item: http://hdl.handle.net/2381/32763
Title: The splicing landscape is globally reprogrammed during male meiosis
Authors: Schmid, Ralf
Grellscheid, S. N.
Ehrmann, I.
Dalgliesh, C.
Danilenko, M.
Paronetto, M. P.
Pedrotti, S.
Grellscheid, D.
Dixon, R. J.
Sette, C.
Eperon, Ian C.
Elliott, D. J.
First Published: 12-Sep-2013
Publisher: Oxford University Press
Citation: Nucleic Acids Research, 2013, 41 (22), pp. 10170-10184
Abstract: Meiosis requires conserved transcriptional changes, but it is not known whether there is a corresponding set of RNA splicing switches. Here, we used RNAseq of mouse testis to identify changes associated with the progression from mitotic spermatogonia to meiotic spermatocytes. We identified ∼150 splicing switches, most of which affect conserved protein-coding exons. The expression of many key splicing regulators changed in the course of meiosis, including downregulation of polypyrimidine tract binding protein (PTBP1) and heterogeneous nuclear RNP A1, and upregulation of nPTB, Tra2β, muscleblind, CELF proteins, Sam68 and T-STAR. The sequences near the regulated exons were significantly enriched in target sites for PTB, Tra2β and STAR proteins. Reporter minigene experiments investigating representative exons in transfected cells showed that PTB binding sites were critical for splicing of a cassette exon in the Ralgps2 mRNA and a shift in alternative 5' splice site usage in the Bptf mRNA. We speculate that nPTB might functionally replace PTBP1 during meiosis for some target exons, with changes in the expression of other splicing factors helping to establish meiotic splicing patterns. Our data suggest that there are substantial changes in the determinants and patterns of alternative splicing in the mitotic-to-meiotic transition of the germ cell cycle.
DOI Link: 10.1093/nar/gkt811
ISSN: 0305-1048
eISSN: 1362-4962
Links: http://nar.oxfordjournals.org/content/41/22/10170
http://hdl.handle.net/2381/32763
Version: Publisher Version
Status: Peer-reviewed
Type: Journal Article
Rights: Copyright © The Author(s) 2013. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
Appears in Collections:Published Articles, Dept. of Biochemistry

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