Please use this identifier to cite or link to this item: http://hdl.handle.net/2381/33499
Full metadata record
DC FieldValueLanguage
dc.contributor.authorGharib, S. A.-
dc.contributor.authorLoth, D. W.-
dc.contributor.authorSoler Artigas, María-
dc.contributor.authorBirkland, T. P.-
dc.contributor.authorWilk, J. B.-
dc.contributor.authorWain, Louise V.-
dc.contributor.authorBrody, J. A.-
dc.contributor.authorObeidat, M.-
dc.contributor.authorHancock, D. B.-
dc.contributor.authorTang, W.-
dc.contributor.authorRawal, R.-
dc.contributor.authorBoezen, H. M.-
dc.contributor.authorImboden, M.-
dc.contributor.authorHuffman, J. E.-
dc.contributor.authorLahousse, L.-
dc.contributor.authorAlves, A. C.-
dc.contributor.authorManichaikul, A.-
dc.contributor.authorHui, J.-
dc.contributor.authorMorrison, A. C.-
dc.contributor.authorRamasamy, A.-
dc.contributor.authorSmith, A. V.-
dc.contributor.authorGudnason, V.-
dc.contributor.authorSurakka, I.-
dc.contributor.authorVitart, V.-
dc.contributor.authorEvans, D. M.-
dc.contributor.authorStrachan, D. P.-
dc.contributor.authorDeary, I. J.-
dc.contributor.authorHofman, A.-
dc.contributor.authorGläser, S.-
dc.contributor.authorWilson, J. F.-
dc.contributor.authorNorth, K. E.-
dc.contributor.authorZhao, J. H.-
dc.contributor.authorHeckbert, S. R.-
dc.contributor.authorJarvis, D. L.-
dc.contributor.authorProbst-Hensch, N.-
dc.contributor.authorSchulz, H.-
dc.contributor.authorBarr, R. G.-
dc.contributor.authorJarvelin, M. R.-
dc.contributor.authorO'Connor, G. T.-
dc.contributor.authorKähönen, M.-
dc.contributor.authorCassano, P. A.-
dc.contributor.authorHysi, P. G.-
dc.contributor.authorDupuis, J.-
dc.contributor.authorHayward, C.-
dc.contributor.authorPsaty, B. M.-
dc.contributor.authorHall, I. P.-
dc.contributor.authorParks, W. C.-
dc.contributor.authorTobin, Martin D.-
dc.contributor.authorLondon, S. J.-
dc.contributor.authorCHARGE Consortium; SpiroMeta Consortium-
dc.date.accessioned2015-11-06T11:32:41Z-
dc.date.available2016-09-22T01:45:08Z-
dc.date.issued2015-09-22-
dc.identifier.citationHuman Molecular Genetics, 2015, 24 (23) : 6836-6848en
dc.identifier.issn0964-6906-
dc.identifier.urihttp://hmg.oxfordjournals.org/content/24/23/6836en
dc.identifier.urihttp://hdl.handle.net/2381/33499-
dc.descriptionThis is a pre-copyedited, author-produced PDF of an article accepted for publication in Human Molecular Genetics following peer review. The version of record Hum. Mol. Genet. (2015) 24 (23): 6836-6848.doi: 10.1093/hmg/ddv378 is available online at: http://hmg.oxfordjournals.org/content/24/23/6836en
dc.description.abstractChronic respiratory disorders are important contributors to the global burden of disease. Genome-wide association studies (GWASs) of lung function measures have identified several trait-associated loci, but explain only a modest portion of the phenotypic variability. We postulated that integrating pathway-based methods with GWASs of pulmonary function and airflow obstruction would identify a broader repertoire of genes and processes influencing these traits. We performed two independent GWASs of lung function and applied gene set enrichment analysis to one of the studies and validated the results using the second GWAS. We identified 131 significantly enriched gene sets associated with lung function and clustered them into larger biological modules involved in diverse processes including development, immunity, cell signaling, proliferation and arachidonic acid. We found that enrichment of gene sets was not driven by GWAS-significant variants or loci, but instead by those with less stringent association P-values. Next, we applied pathway enrichment analysis to a meta-analyzed GWAS of airflow obstruction. We identified several biologic modules that functionally overlapped with those associated with pulmonary function. However, differences were also noted, including enrichment of extracellular matrix (ECM) processes specifically in the airflow obstruction study. Network analysis of the ECM module implicated a candidate gene, matrix metalloproteinase 10 (MMP10), as a putative disease target. We used a knockout mouse model to functionally validate MMP10's role in influencing lung's susceptibility to cigarette smoke-induced emphysema. By integrating pathway analysis with population-based genomics, we unraveled biologic processes underlying pulmonary function traits and identified a candidate gene for obstructive lung disease.en
dc.language.isoenen
dc.publisherOxford University Pressen
dc.relation.urihttp://www.ncbi.nlm.nih.gov/pubmed/26395457-
dc.rightsCopyright © 2015, Oxford University Press (OUP). Deposited with reference to the publisher’s archiving policy available on the SHERPA/RoMEO website.en
dc.titleIntegrative pathway genomics of lung function and airflow obstruction.en
dc.typeJournal Articleen
dc.identifier.doi10.1093/hmg/ddv378-
dc.identifier.eissn1460-2083-
dc.identifier.piiddv378-
dc.description.statusPeer-revieweden
dc.description.versionPost-printen
dc.type.subtypeJOURNAL ARTICLE-
pubs.organisational-group/Organisationen
pubs.organisational-group/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGYen
pubs.organisational-group/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/School of Medicineen
pubs.organisational-group/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/School of Medicine/Department of Health Sciencesen
pubs.organisational-group/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/Themesen
pubs.organisational-group/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/Themes/Genome Scienceen
pubs.organisational-group/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/Themes/Populationen
pubs.organisational-group/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/Themes/Respiratory Scienceen
dc.dateaccepted2015-09-10-
Appears in Collections:Published Articles, Dept. of Health Sciences

Files in This Item:
File Description SizeFormat 
Main text.final.pdfPost-review (final submitted)308.17 kBAdobe PDFView/Open


Items in LRA are protected by copyright, with all rights reserved, unless otherwise indicated.